DNA Damage Atlas

GSM4509224-ENDseq-KM12-siWRN

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11680393


Source Project ID:   

GSE149706

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

WRN siRNAs


Treatment Time:   

72hrs


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.010179


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr312200673412200693412200693486.2289-
chr493710371937105879371038774.0727+
chr1011538014115382141153801465.0455+
chr261824972618251746182497453.2978+
chr1760408875604090756040907550.5909-
chr1050374739503749395037493941.1207-
chrX17736237177364371773643740.8715-
chrUn_gl00021463640659256507539.6565+
chrX37729733377300713773007135.9815-
chr1110507092810507117210507113334.7269-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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