DNA Damage Atlas

GSM4509225-ENDseq-KM12-siCTRL

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11680394


Source Project ID:   

GSE149706

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

non-targeting siRNAs


Treatment Time:   

72hrs


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002312


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr4427347264273492642734726319.488+
chr3482958394829605148296039217.376-
chr3172174627172174827172174627191.499+
chr3122006594122006934122006934153.878-
chr2618248586182517461824974134.07+
chr19402050540207164020515129.392+
chr1011537827115383071153801486.3263+
chr1858234338582347445823453881.5531-
chr1293452142934523429345234275.3217-
chr1243240036432406104324041070.1653+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab