DNA Damage Atlas


GSM4509226-ENDseq-HCT116-siWRN




Basic Information

Manual

Sample ID:   

SRR11680395


Source Project ID:   

GSE149706

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

WRN siRNAs


Treatment Time:   

72hrs


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.014245



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1483073616830738368307362252.0192+
chrUn_gl00021463906662016507544.2314+
rDNA34067649539530.1258+
chr1310504578710504757610504627728.1317+
chrX37729664377300713773007126.2365-
chr611699040117015481170065024.3963-
chr214768985114769052414769005624.1013-
chr250556817505571235055682419.7304+
rDNA3333796619.5279+
chr1385876241858766648587624718.2141+
Download the Full Peak List



Motif Analysis

Manual





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