DNA Damage Atlas

GSM4509227-ENDseq-HCT116-siCTRL

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11680396


Source Project ID:   

GSE149706

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

non-targeting siRNAs


Treatment Time:   

72hrs


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004154


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr442734726427349944273472641.1406+
chr644942024494402449420230.9974+
chrUn_gl00021463906660166507529.4001+
chr312200673412200710212200693429.2147-
chr1011537958115383071153801420.7991+
chrX17736237177364371773643718.6377-
chr1745097485450976854509748516.4797+
chr514924679114924699114924679116.4797+
chr493710072937107569371038714.8574+
chrX37729871377301673773007114.8465-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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