DNA Damage Atlas

GSM4509228-ENDseq-SW837-DOX

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11680397


Source Project ID:   

GSE149706

Cell Type:   

SW837


Organism:   

Homo sapiens


Treatment:   

Doxycycline


Treatment Time:   

72hrs


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001873


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451228664519006645137638.6539+
chr616052161816052218116052183730.4193-
chr1577910727779111597791087126.8107+
chrUn_gl00021680492808798071723.27-
chr310176097810176119610176117822.2069-
chr1438126674381268913812689122.1893-
chr851279115512796865127943421.2413+
chr417085901709152170902819.9142-
chr141486263414864634148646319.911-
chr120803744820803764820803744817.8288+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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