Sample Detail

Basic Information

Manual

Sample ID:

SRR11680398

Source Project ID:

GSE149706

Cell Type:

KM12

Organism:

Homo sapiens

Treatment:

Doxycycline + non-targeting siRNAs

Treatment Time:

72hrs

Genotype:

Dox inducible shWRN

In-situ Treatment:

Exo VII + Exo T

Spike-in Intensity:

no spike in

Layout:

SINGLE

Instrument model:

Illumina NextSeq 550

Technique:

END-seq

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.001101

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrX	37729869	37730366	37730071	29.4954	-
chr19	39225661	39226268	39226195	25.3423	-
chrX	34035811	34036064	34036064	18.7751	-
chr9_gl000199_random	34180	35191	34500	14.9976	-
chr1	247858824	247864216	247862120	13.8969	+
chr2	214504913	214511510	214508140	13.7523	+
chrUn_gl000212	40416	41292	40846	12.5687	+
chrX	130621941	130628237	130623469	12.4611	-
chr1	16470612	16470812	16470612	11.0101	+
chr13	48105293	48111503	48106973	10.8556	-

Download the Full Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download