DNA Damage Atlas

GSM4509230-ENDseq-KM12-DOX-siMUS81

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11680399


Source Project ID:   

GSE149706

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

Doxycycline + MUS81 siRNAs


Treatment Time:   

72hrs


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000703


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34180350713442718.4152+
chr2076436907644020764401511.3359-
chrUn_gl00021240480412924084611.1753+
chr1939225790392263803922619510.672-
chr146441291064413620644134209.80729+
chrUn_gl0002161630771640841635238.86415+
chr19_gl000208_random65971618.71117+
chr6_cox_hap27088187093157090197.75044-
chrUn_gl0002252543726124257437.65563-
chr61577087221577090221577087617.53109+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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