DNA Damage Atlas

GSM4509231-ENDseq-KM12-DOX-siSLX4

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11680400


Source Project ID:   

GSE149706

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

Doxycycline + SLX4 siRNAs


Treatment Time:   

72hrs


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001142


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX34035864340360643403606420.986-
chr1464412979644139776441342017.4784+
chr9_gl000199_random34180350683442714.6567+
chrUn_gl00021240446413394084614.2728+
chr110923518810923586210923552213.3116-
chrX37729493377300713773007110.1263-
chr21751181621751184221751183749.47851-
chr212576368225764050257640059.41733-
chrX1773623717736697177364377.95242-
chr192419113241959824192077.86008+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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