Sample Detail

Basic Information

Manual

Sample ID:

SRR11680401

Source Project ID:

GSE149706

Cell Type:

KM12

Organism:

Homo sapiens

Genotype:

Dox inducible shWRN

In-situ Treatment:

Exo VII + Exo T + MUS81-EME1

Spike-in Intensity:

no spike in

Layout:

SINGLE

Instrument model:

Illumina NextSeq 550

Technique:

END-seq

Others:

control: GSM4509233-ENDseq-KM12-NT-for-MUS81-EME1-rep1

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.000782

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr6	11700445	11700948	11700650	150.432	-
chr8	86092294	86093125	86092731	66.6678	-
chr7	42852466	42853595	42853026	58.1982	-
chr20	40904616	40905777	40905122	50.4445	-
chrX	36382501	36383669	36383081	49.9951	+
chr18	31626340	31626901	31626615	49.1145	+
chr7	31230588	31231554	31231176	48.5882	+
chr8	15230693	15231796	15231372	48.5814	+
chr14	84841966	84843005	84842543	47.2997	-
chr8	1377570	1378828	1378152	46.7889	-

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrX	37729870	37730071	37730071	261.225	-
chr6	11700445	11700948	11700650	169.699	-
chr11	105070847	105071700	105071131	79.8482	-
chr20	40904704	40905754	40905122	75.2454	-
chr7	31230921	31231554	31231176	70.9062	+
chr11	55057392	55058105	55057903	70.3504	+
chr5	55326676	55327295	55326998	68.5871	-
chr19	28632818	28633450	28633083	64.9123	-
chr9	106187638	106188150	106187898	64.1454	-
chr2	49562226	49562661	49562428	61.3071	-

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download