Sample Detail

Basic Information

Manual

Sample ID:

SRR11680403

Source Project ID:

GSE149706

Cell Type:

KM12

Organism:

Homo sapiens

Genotype:

Dox inducible shWRN

In-situ Treatment:

Exo VII + Exo T + MUS81-EME1

Spike-in Intensity:

no spike in

Layout:

SINGLE

Instrument model:

Illumina NextSeq 550

Technique:

END-seq

Others:

control: GSM4509235-ENDseq-KM12-NT-for-MUS81-EME1-rep2

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.003686

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrX	37729870	37730071	37730071	424.675	-
chr5	55326676	55327295	55326998	107.05	-
chr20	40904704	40905754	40905122	94.9006	-
chr6	11700088	11701095	11700650	94.7783	-
chr11	105070847	105071700	105071133	94.4316	-
chr19	28632818	28633450	28633083	86.81	-
chr9	106187638	106188150	106187898	86.0727	-
chr2	146952784	146953005	146952797	84.4705	+
chr4	155310455	155310900	155310666	79.6579	-
chr11	55057392	55058105	55057903	71.0519	+

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrX	37729870	37730071	37730071	261.225	-
chr6	11700445	11700948	11700650	169.699	-
chr11	105070847	105071700	105071133	79.8482	-
chr20	40904704	40905754	40905122	75.2454	-
chr7	31230921	31231554	31231176	70.9062	+
chr11	55057392	55058105	55057903	70.3504	+
chr5	55326676	55327295	55326998	68.5871	-
chr19	28632818	28633450	28633083	64.9123	-
chr9	106187638	106188150	106187898	64.1454	-
chr2	49562226	49562661	49562428	61.3071	-

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download