DNA Damage Atlas

GSM4509236-ENDseq-KM12-WRN

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12304680


Source Project ID:   

GSE149706

Cell Type:   

KM12


Organism:   

Homo sapiens


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001678


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002124044741498409179.23122-
chrUn_gl0002256495720669078.82743-
chr9_gl000199_random3402735072344358.63816+
chrUn_gl0002281152861201521185337.93938-
chr12362599782362608032362606227.91073-
chrUn_gl0002161618371640831636096.59086-
chrUn_gl0002161690351700101695956.43723-
chrX3403579834036068340360646.20499-
chrUn_gl0002251101471121281116076.03356-
chr31458142421458152511458148295.72468-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab