DNA Damage Atlas

GSM4509237-ENDseq-KM12-WRN-ATP-ProK-MUS81-EME1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11680406


Source Project ID:   

GSE149706

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

ATP followed by proteinse K


Treatment Dose:   

ATP: 2mM


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T + MUS81-EME1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000526


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr141486003414864754148646313.1986-
chrX15200826715200848215200826810.8343+
chr9_gl000199_random34048354023443710.7823+
chr45357850153579159535788339.3442-
chr195691942569227456922328.72947-
chrUn_gl0002258543485924856328.51269+
chr195791073579174857911747.9853+
chr133015640330156887301564697.77878+
chrUn_gl0002124047541423408467.48574+
chrUn_gl0002281153211201061185336.75872-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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