DNA Damage Atlas

GSM4509238-ENDseq-HCT116-MUS81-EME1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11680407


Source Project ID:   

GSE149706

Cell Type:   

HCT116


Organism:   

Homo sapiens


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T + MUS81-EME1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4509239-ENDseq-HCT116-NT-for-MUS81-EME1


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001363


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1310504626910504673010504627777.279+
chr611700068117012851170065041.9215-
chr1670134052701346047013432430.8685+
chr322565307225664672256589325.378+
chr562571160625723306257167824.6281-
chr2040904667409057724090512224.3383-
chr1349099090491000254909950123.7472-
chr992866149287409928693922.7512+
chr1671337225713380087133775922.7176-
chr219293943019294064019294000021.9789-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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