DNA Damage Atlas

GSM4509240-ENDseq-SW837-MUS81-EME1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11680409


Source Project ID:   

GSE149706

Cell Type:   

SW837


Organism:   

Homo sapiens


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T + MUS81-EME1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003627


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr615602928815602949615602929018.0178+
chr9_gl000199_random34185351863443516.018+
chr1112724476012724541912724534514.4812-
chr268679285686795166867929911.3734+
rDNA73614140311.0542+
chr121039010241039014751039010709.59479+
chrX3403585534036318340360647.25993-
chr62918961129190124291901247.15485-
chrUn_gl0002251071091077601073517.00318-
chrUn_gl0002281153951199881185336.80528-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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