DNA Damage Atlas

GSM4509241-ENDseq-RPE1-MUS81-EME1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11680410


Source Project ID:   

GSE149706

Cell Type:   

RPE1


Organism:   

Homo sapiens


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T + MUS81-EME1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.005838


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr516411083916411105716411084931.8102+
chr615602928715602949615602929018.17+
chr9_gl000199_random34190350773450215.1522-
chr1210390088910390151810390107011.7598+
chrUn_gl00021463127661996507510.2011+
chrUn_gl0002258524086086856328.15793+
chrUn_gl0002281154261198041185337.89723-
chrUn_gl0002161627831647701635237.42872+
chr26867927068679722686793047.01353+
chrX1194302241194305611194304736.76119-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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