DNA Damage Atlas

GSM4511929-DataTOgi_WTrep2_4h_SSPE_TagDir

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR11682265


Source Project ID:   

GSE149760

Cell Type:   

RPE1-iCas9


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

4hrs


Treatment Dose:   

9J/m2


Genotype:   

WT


Harvested Time:   

time after uv-c: 4 hours


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-RNAPII-S2 clone 3E10)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random15568615638715589117.8104/
chr1630702463077656307422717.5367/
chrUn_gl00022667477271700817.5052/
chr186046255860516338605011214.9951/
chr2237963049379705143796744813.4823/
chr1246748460467548944675146413.425/
chr9_gl000199_random72732731277292812.9011/
chr9_gl000199_random91015921409188012.2303/
chr219255974119256241019256101011.8377/
chr517688058117688397817688252111.701/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random15571315607015589134.2585/
chrUn_gl00022667677204700820.9902/
chr9_gl000199_random91327921169188016.7927/
chr2237964368379704493796744815.2099/
chr186046255860516338605011214.9951/
chr9_gl000199_random72755731097292814.3953/
chr1165655494656605076565821013.6217/
chr517688098417688397817688252113.1058/
chr814489685214489880914489789212.499/
chr115523067815523297915523193012.1253/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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