DNA Damage Atlas


GSM4511936-DataTOgi_CSBKOrep1_1h_SSPE_TagDir




Basic Information

Manual

Sample ID:   

SRR11682272


Source Project ID:   

GSE149760

Cell Type:   

RPE1-iCas9


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

1hr


Treatment Dose:   

9J/m2


Genotype:   

CSB-KO


Harvested Time:   

time after uv-c: 1 hour


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-RNAPII-S2 clone 3E10)


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022667797232700424.6797/
chr9_gl000199_random15553115606015588721.9794/
chr9_gl000199_random92540929759275620.0467/
chr186046281860520078604999117.299/
chr1630701643076982307421417.0371/
chr1161728890617344526173047313.7487/
chr1924784052480085247906513.7087/
chr9_gl000199_random91365921089188613.5423/
chr9_gl000199_random72755730937292312.5691/
rDNA42187264512.3946/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022667927154700430.8837/
chr9_gl000199_random15556115604315588724.1226/
chr9_gl000199_random91684920799188623.2089/
chr9_gl000199_random92568929759275621.4259/
chr1630701643076297307421418.5937/
chr186046281860520078604999117.299/
chr9_gl000199_random72767730597292314.5492/
rDNA45484664514.2601/
chr1161728890617344526173047313.7487/
chr1924784052480085247906513.7087/
Download the Full Merged Peak List



Motif Analysis

Manual





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