DNA Damage Atlas

GSM4511939-DataTOgi_CSBKOrep2_4h_SSPE_TagDir

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR11682275


Source Project ID:   

GSE149760

Cell Type:   

RPE1-iCas9


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

4hrs


Treatment Dose:   

9J/m2


Genotype:   

CSB-KO


Harvested Time:   

time after uv-c: 4 hours


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-RNAPII-S2 clone 3E10)


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022667527258700420.4268/
chr9_gl000199_random15553215629515589616.5944/
chr1568132274681327476813250916.3889/
chr9_gl000199_random87884882618807111.6519/
chr186046249860519738604992711.3761/
rDNA39488463811.0742/
chr9_gl000199_random91101921369187910.9851/
chr9_gl000199_random7274673122729339.62124/
chrUn_gl0002265486586056728.98178/
rDNA1470211717098.38698/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022668017230700424.0931/
chr9_gl000199_random15553215629515589616.5944/
chr1568132274681327476813250916.3889/
chr9_gl000199_random91402920949187916.0566/
chr9_gl000199_random87923882198807114.8405/
chr1622309731223103932230998113.4664/
rDNA43887063812.5611/
chr9_gl000199_random72778730827293311.9/
chr186046249860517558604992711.7795/
chr9_gl000199_random82873831418294311.5701/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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