DNA Damage Atlas

GSM4511941-DataTOgi_CSBKOrep2_8h_SSPE_TagDir

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11682277


Source Project ID:   

GSE149760

Cell Type:   

RPE1-iCas9


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

8hrs


Treatment Dose:   

9J/m2


Genotype:   

CSB-KO


Harvested Time:   

time after uv-c: 8 hours


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-RNAPII-S2 clone 3E10)


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random15572215606415589245.8387/
chrUn_gl00022664437232700616.303/
chr9_gl000199_random91349920969188013.7219/
rDNA42888365412.3683/
chr9_gl000199_random72770730887292812.0086/
rDNA14851899169111.6513/
chr9_gl000199_random8287083135830019.10122/
chr9_gl000199_random9256693379927688.89971/
rDNA6307672365148.21334/
rDNA2813324030258.00175/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random15576615605915589253.5046/
chrUn_gl00022667987218700630.1478/
chr9_gl000199_random92566929239276819.7044/
chr9_gl000199_random72809730487292815.9779/
chr9_gl000199_random91389920679188015.1184/
rDNA45784865414.3928/
rDNA14851899169111.6513/
rDNA29023216302510.8814/
chr9_gl000199_random8398084768843669.3096/
chrUn_gl0002146435365331645598.22025/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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