DNA Damage Atlas

GSM4511945-DataTOgi_ELOFKOrep2_mock_SSPE_TagDir

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR11682281


Source Project ID:   

GSE149760

Cell Type:   

RPE1-iCas9


Organism:   

Homo sapiens


Treatment:   

mock UV teatment


Genotype:   

ELOF1-KO


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-RNAPII-S2 clone 3E10)


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1161728729617355016173104524.6079/
chrX12992950129987821299594821.241/
chr186045885860515438605008720.591/
chr1774811677484669748279617.9574/
chr1630697063075841307421017.6507/
chr1847012935470148884701382917.0439/
chr1948245529482501464824859515.058/
chr1074033039740382677403638814.89/
chr613969010213969608613969280514.7163/
chr1773770172737751087377230814.5971/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1161728952617355016173104525.4136/
chrX12992993129986221299594822.007/
chr186046237860515138605008722.002/
chr1949995045499979714999660020.9524/
chr1630703263075841307421019.2913/
chr1774811677484392748279619.2711/
chr1074033202740375077403638817.3483/
chr1134124966341279853412700017.1667/
chr1847012935470148884701382917.0439/
chr1948245767482499324824859516.4646/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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