DNA Damage Atlas

GSM4511957-WT_mock_rep2_SPPE_TagDir

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR11682293


Source Project ID:   

GSE149760

Cell Type:   

RPE1-iCas9


Organism:   

Homo sapiens


Treatment:   

mock UV teatment


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-Pan-RNAPII)


Others:   

control: GSM4511955-WT_input_rep2_SSPE_TagDir


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA44086263417.5903/
chr186045962860520328604651317.4453/
chr114922229514922465914922411216.8698/
chr1757913374579246695792104916.8123/
chr1920505542051660205117716.6422/
chr557743719577571245775586914.3694/
chr111967807119705821196985814.2893/
chr1165264154652765586526656114.2375/
chr1565588082655896426558843513.9838/
chr1212072830612073148712072952913.6562/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr186045962860520328604651317.4453/
chr1757913509579246695792104917.0157/
chr114922231014922465914922411216.9775/
chr1920505542051659205117716.6572/
chr111967832119703461196985815.7427/
chr1164794767647957106479519015.101/
chr513767363313767456813767400414.9466/
chr557743719577571245775586914.3694/
chr1165264154652765586526656114.2375/
chr1770588297705891127058888014.0804/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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