DNA Damage Atlas

GSM4511964-ELOF1_mock_rep1_SPPE_TagDir

Basic Information Genome Browser Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR11682300


Source Project ID:   

GSE149760

Cell Type:   

RPE1-iCas9


Organism:   

Homo sapiens


Treatment:   

mock UV teatment


Genotype:   

ELOF1-KO


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-Pan-RNAPII)


Others:   

control: GSM4511962-ELOF1_input_rep1_SPPE_TagDir


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1165263393652765236526656227.3664/
chr626156001261597612615661523.6087/
chr114922308614922505614922411722.1957/
chr111969557119702531196987322.1567/
chr1017268779172825111727134622.094/
chr1565587903655894206558844821.1031/
chr1757913532579248305792104120.9449/
chr1169461669658769524020.5008/
chr1630699483075138307047219.8588/
chr1469250630692635576925974119.287/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1165263685652764896526656228.0174/
chr626156001261597612615661523.6087/
chr114922308614922505614922411722.1957/
chr111969557119702531196987322.1567/
chr1017268779172825111727134622.094/
chr1757913658579245225792104121.7501/
chr1565587903655894206558844821.1031/
chr1169461669658769524020.5008/
chr1630699483075057307047220.1259/
chr1469251089692635576925974119.9188/
Download the Full Merged Peak List


Visualization

Manual





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