DNA Damage Atlas


GSM4511969-ELOF1_UV_rep2_SPPE_TagDir




Basic Information

Manual

Sample ID:   

SRR11682305


Source Project ID:   

GSE149760

Cell Type:   

RPE1-iCas9


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

8hrs


Treatment Dose:   

9J/m2


Genotype:   

ELOF1-KO


Harvested Time:   

time after uv-c: 8 hours


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-Pan-RNAPII)


Others:   

control: GSM4511963-ELOF1_input_rep2_SSPE_TagDir


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1164794600647958436479521520.1629/
chr1918335016183359311833543520.0011/
chr1630668345306719343067012916.6415/
chr1169459069672569523314.4413/
rDNA42586365014.408/
chr1742218679422200194221926214.3975/
chr186046247860523598604662412.5081/
chr120975660520975750120975698311.9231/
chr1947986702479881304798726511.8689/
chr1114105281411521141101010.4407/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1164794600647958436479521520.1629/
chr1918335016183359311833543520.0011/
chr1630668345306719343067012916.6415/
chr1742218679422199744221926214.863/
rDNA43686365014.7792/
chr1169459069672569523314.4413/
chr186046247860523598604662412.5081/
chr1114105281411389141101012.0413/
chr120975660520975750120975698311.9231/
chr1947986702479881304798726511.8689/
Download the Full Merged Peak List



Motif Analysis

Manual





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