DNA Damage Atlas

GSM4511970-CSB-KO_mock_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11682306


Source Project ID:   

GSE149760

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

mock UV teatment


Genotype:   

CSB-KO


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

TCR-seq (anti-Pan-RNAPII)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM046303896115.123/
chr1164794071647956496479519746.1942/
chr775543708755450157554450532.8661/
chr626155576261621632615658232.7724/
chr114922218814922524414922405131.1652/
chr1481685303816895668168718830.704/
chr1742218725422203234221925729.3686/
chr1773774211737765817377581529.2687/
chr627098555271050592710085627.5386/
chr913131394913131584113131490725.5526/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM045943896116.025/
chr1280885768089006808877072.331/
chr127481306274817762748158358.4414/
chr626055072260570942605665057.9414/
chr1164794277647955896479519755.355/
chr627099171271020492710085654.7314/
chr128974507289762202897517251.6685/
chr626020351260227602602071247.3994/
chr1742218860422198484221925746.4318/
chr215134400115134440715134415444.8526/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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