DNA Damage Atlas

GSM4511972-CSB-KO_UV_6J8h_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11682308


Source Project ID:   

GSE149760

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

8hrs


Treatment Dose:   

6J/m2


Genotype:   

CSB-KO


Harvested Time:   

time after uv-c: 8 hours


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

TCR-seq (anti-Pan-RNAPII)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM07574278772.4866/
chr1947986538479880344798725627.5348/
chr1164794183647971316479520427.399/
chr1630668594306726673067041425.6055/
chr1742218522422209684221924121.7713/
chr9_gl000199_random56966574745716221.0267/
chr1423355492233574822335665720.0554/
chr115389438615389723715389575918.5559/
chr9_gl000199_random72752731717294918.0769/
chr1955987386559892355598833518.0136/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM042502787121.452/
chr1164794457647954656479520476.9713/
chr1630668839306716223067041436.5601/
chr1947986730479879244798725634.0112/
chr1655291825552922375529203827.9531/
chr9_gl000199_random57020574265716225.6874/
chr115389443015389641815389575925.3802/
chr1742218767422208684221924125.1706/
chr1423355570233573312335665722.5752/
rDNA48381964322.0799/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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