DNA Damage Atlas

GSM4513196-AsiSI_gH2A_2_2h

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR11684536


Source Project ID:   

GSE149807

Organism:   

Saccharomyces cerevisiae


Strain:   

YSB958


Harvested Time:   

2hrs


Targeted break:   

AsiSI (2hrs)


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 1500


Technique:   

ChIP-seq (anti-γH2AX)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrV47672647672912152//
chrVII12064120679510.27//
chrXIII3115123115159510.27//
chrXV2792912792949246.09//
chrIV5049835049868717.75//
chrXIII1389491389528717.75//
chrV4005824005858453.57//
chrXIII1217601217638453.57//
chrX1339031339067132.7//
chrII7980467980496340.18//
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrV476726476729/11875.3/
chrIX291770291773/9935.94/
chrVIII2657026573/9298.08/
chrXII9555595558/8837.31/
chrX133903133906/8640.75/
chrXV279291279294/8247.62/
chrXIII311512311515/7654.8/
chrIV504983504986/7258.53/
chrXIII138949138952/7258.53/
chrIV389654389657/7123.32/
Download the Full Merged Peak List


Visualization

Manual





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