DNA Damage Atlas

GSM4513306-fun30_ctr_RPA_1_6h

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR11684646


Source Project ID:   

GSE149807

Organism:   

Saccharomyces cerevisiae


Strain:   

YSB958


Harvested Time:   

6hrs


Targeted break:   

AsiSI (6hrs)


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 1500


Technique:   

ChIP-seq (anti-RPA)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXIV5232285244545236656406.54/
chrIV9870439883719879104411.65/
chrXIV9685097515970454083.79/
chrX4774894779144777133432.98/
chrX4764754768874766882507.22/
chrXII5969345975705973702230.43/
chrXII4595574607494602012128.53/
chrXIII3580673591563583281549.59/
chrIV8825108830008827691301.78/
chrI163527164233163715957.444/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXIV5232405244545236656469.86/
chrIV9871429883719879104764.12/
chrXIV9685097498970454190.93/
chrX4775094779134777133611.43/
chrXII5971275975655973703219.69/
chrX4764964768724766882747.27/
chrXII4595584607494602012130.32/
chrXIII3580733591563583281558.18/
chrIV8825338830008827691365.9/
chrXVI8538888547788545001171.34/
Download the Full Merged Peak List


Visualization

Manual





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