DNA Damage Atlas

GSM4513320-fun30_mut_RPA_1_2h

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR11684660


Source Project ID:   

GSE149807

Organism:   

Saccharomyces cerevisiae


Strain:   

YMP111


Genotype:   

fun30Δ rad9Δ


Harvested Time:   

2hrs


Targeted break:   

AsiSI (2hrs)


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 1500


Technique:   

ChIP-seq (anti-RPA)


Others:   

control: GSM4513304-fun30_ctr_RPA_1_2h


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXII4595664607604605493195.8/
chrIV9870929883919879122906.83/
chrXIV5232285244455239352553/
chrXIV9685097503970461980.53/
chrX4774894779124777091579.21/
chrVII1090517103134581408.63/
chrII6354706434916428041172.97/
chrX476496476890476692837.865/
chrXII596902597570597356725.296/
chrM811848525881478677.083/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrIV9873289883069879123853.97/
chrXII4595664607524605493217.36/
chrXIV5232285244455239352553/
chrXIV9685197488970462030.28/
chrX4775024778994777091682.63/
chrVII1108117027134581468/
chrII6354706434916428041172.97/
chrX476496476890476692837.865/
chrXII596917597566597356740.546/
chrM495385153050675701.395/
Download the Full Merged Peak List


Visualization

Manual





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