DNA Damage Atlas

GSM4513322-fun30_mut_RPA_1_6h

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR11684662


Source Project ID:   

GSE149807

Organism:   

Saccharomyces cerevisiae


Strain:   

YMP111


Genotype:   

fun30Δ rad9Δ


Harvested Time:   

6hrs


Targeted break:   

AsiSI (6hrs)


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 1500


Technique:   

ChIP-seq (anti-RPA)


Others:   

control: GSM4513306-fun30_ctr_RPA_1_6h


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXIV5232355244585239371882.11/
chrIV9870509883849879051553.83/
chrXIV9685097545970461208.52/
chrX4775074779134777071009.55/
chrX476483476878476679642.364/
chrXII459551460752460199605.095/
chrXII596898597570597371535.873/
chrII806641810513810277429.644/
chrVII8794108589581380.462/
chrIV882519882984882784335.793/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrIV9873199883249879052060.88/
chrXIV5232355244585239371882.11/
chrXIV9685797503970461300.19/
chrX4775124779134777071022.14/
chrX476497476878476679665.114/
chrXII459560460751460199610.176/
chrXII596903597566597371541.185/
chrII806791810513810277445.211/
chrI112535114968114390381.856/
chrIV882543882984882784354.068/
Download the Full Merged Peak List


Visualization

Manual





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