DNA Damage Atlas

GSM4513323-fun30_mut_RPA_2_0h

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR11684663


Source Project ID:   

GSE149807

Organism:   

Saccharomyces cerevisiae


Strain:   

YMP111


Genotype:   

fun30Δ rad9Δ


Harvested Time:   

0hr


Targeted break:   

AsiSI (0hr)


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 1500


Technique:   

ChIP-seq (anti-RPA)


Others:   

control: GSM4513307-fun30_ctr_RPA_2_0h


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXII4595604607524605515464.14/
chrIV9870829883709879114039.84/
chrXIV5232355244575239313550.19/
chrXIV9685497489970473044.51/
chrX4775184779174777162124.61/
chrXII596913597566597356904.624/
chrX476464476890476678702.337/
chrM498265157650668681.684/
chrM812788526082450672.38/
chrVII569744570102569922653.593/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXII4595604607524605515464.14/
chrIV9871289883409879114293.17/
chrXIV5232415244575239313567.71/
chrXIV9685497489970473044.51/
chrX4775184779174777162124.61/
chrXII596936597566597356931.561/
chrX476492476850476678835.742/
chrIV882598882955882789719.892/
chrVII569744570102569922653.593/
Download the Full Merged Peak List


Visualization

Manual





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