DNA Damage Atlas

GSM4513325-fun30_mut_RPA_2_4h

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR11684665


Source Project ID:   

GSE149807

Organism:   

Saccharomyces cerevisiae


Strain:   

YMP111


Genotype:   

fun30Δ rad9Δ


Harvested Time:   

4hrs


Targeted break:   

AsiSI (4hrs)


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 1500


Technique:   

ChIP-seq (anti-RPA)


Others:   

control: GSM4513309-fun30_ctr_RPA_2_4h


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrIV9873309883089879123892.68/
chrXIV5232125244595239322313.17/
chrXIV9685297468970461998.23/
chrX4775034779114777121283.66/
chrXII459574460750460023761.846/
chrXII596935597565597356755.366/
chrX476497476884476689625.137/
chrXV117796118221118021613.03/
chrIV892856899634899397588.152/
chrIV903407911016907649558.334/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrIV9873309883089879123892.68/
chrXIV5232285244595239322343.24/
chrXIV9685297468970461998.23/
chrX4775034779094777121289.99/
chrXII459574460750460023761.846/
chrXII596935597565597356755.366/
chrII809226810486810282637.208/
chrX476497476883476689626.756/
chrXV117796118221118021613.03/
chrIV892856899615899397589.805/
Download the Full Merged Peak List


Visualization

Manual





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