DNA Damage Atlas

GSM4513338-HO_Dpb11_2_4h

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11684678


Source Project ID:   

GSE149807

Organism:   

Saccharomyces cerevisiae


Strain:   

YSB812


Harvested Time:   

4hrs


Targeted break:   

HO (4hrs)


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 1500


Technique:   

ChIP-seq (anti-Dpb11)


Others:   

GSM4513338-HO_Dpb11_2_4h_1.fastq.gz


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
LYZE01000020.16724760673194111.48/
LYZE01000020.17788900487684079.67/
LYZE01000017.15378257425558382580.14/
LYZE01000017.14201142459422581287.45/
LYZE01000016.1688375017069223.395/
LYZE01000012.1474720477947476188210.583/
LYZE01000010.1705676637415209.753/
LYZE01000007.1108473210854621085249196.475/
LYZE01000006.1618286288562358193.743/
LYZE01000005.1141775142896142180183.366/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
LYZE01000020.16724760673194111.48/
LYZE01000020.17788900487684079.67/
LYZE01000017.15378257425558382580.14/
LYZE01000017.14201342459422581293.22/
LYZE01000007.1108478710854591085249211.15/
LYZE01000012.1474720477947476188210.583/
LYZE01000005.1141775142767142180201.025/
LYZE01000006.1618286283662358200.117/
LYZE01000006.1113437114665114173194.87/
LYZE01000016.1624114625103624636192.329/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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