DNA Damage Atlas

GSM4520694-Bliss_10_Gy_0_Nac_Replicate_1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11727659


Source Project ID:   

GSE150016

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

gamma rays


Treatment Dose:   

10Gy


Cell Phase:   

G1


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004329


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA63596646655928022-
rDNA17462073194619092.9-
chr93565786135658061356578618201.06+
chr116526792265268258652681735826.4-
rDNA7039728072803951.79-
chr191827178182737818271783703.7+
rDNA1267313011129033287.31-
chr161223152122335212233523174.6-
chr161835878183607818360782380.95-
chr125329332253293522532933222116.4+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA63596646655910409-
rDNA1746201119468879.32-
chr116526796665268258652681734717.73-
chr191827178182737818271782133.72+
chr161223152122335212233521982.11-
chr125329332253293522532933221550.84+
chr161835878183607818360781282.5-
chr27469226474692464746922641052.4+
chr11625396616253986162539861819.537-
chr16570956571156571156689.403-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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