DNA Damage Atlas

GSM4520695-Bliss_0_Gy_10_Nac_Replicate_1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11727660


Source Project ID:   

GSE150016

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

N-acetyl-l-cysteine


Treatment Time:   

1hr


Treatment Dose:   

10mM


Cell Phase:   

G1


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004739


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA63596670655953066.3-
rDNA17162309194618165-
chr935657861356580613565786115811.8+
chr116526796665268258652681739476.27-
rDNA1267313043129036410.21-
chr191827178182737818271785435.32+
chr161223152122335212233524447.08-
chr125329332253293522532933223952.96+
chr161835878183607818360782964.72-
chr83028890930289109302891092964.72-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA63596670655929726.7-
rDNA17462073194618331.5-
chr93565786135658061356578618615.32+
chr116526796665268258652681737005.69-
chr191827178182737818271783427.08+
chr125329332253293522532933223158.85+
chr161223152122335212233522932.96-
chr161835878183607818360782191.78-
chr91401476551401478551401476551955.31+
chr116527332365273523652735231697.66-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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