DNA Damage Atlas

GSM4520696-Bliss_10_Gy_10_Nac_Replicate_1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11727661


Source Project ID:   

GSE150016

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

gamma rays + N-acetyl-l-cysteine


Treatment Time:   

1hr NAC


Treatment Dose:   

10Gy gamma rays + 10 mM NAC


Cell Phase:   

G1


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.006098


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA63596670655922011.2-
rDNA17462101194613118.8-
chr93565779435658061356578613992.88+
rDNA7000728072803406.7-
chr116526791065268258652681733385.97-
chr191827178182737818271782524.97+
chr128119408281194288811942821906.66-
rDNA1252713017129031832.18-
chr116527332365273523652735231683.31-
chr161223152122335212233521683.31-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA63596670655912586.7-
rDNA1746207319469505.62-
chr116526796665268258652681733701.61-
chr93565779435658061356578612522.61+
chr125329332253293522532933222457.49+
chr191827178182737818271782140.54+
chr91401476551401478551401476551439.16+
chr161223152122335212233521368.49-
chr10135233106135233306135233306947.663-
chr16570956571156571156912.328-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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