DNA Damage Atlas

GSM4520698-Bliss_10_Gy_0_Nac_Replicate_2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11727663


Source Project ID:   

GSE150016

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

gamma rays


Treatment Dose:   

10Gy


Cell Phase:   

G1


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.009186


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA1662207319467511.77-
rDNA6359665265597497.47-
chr116526796665268258652682583253.25-
rDNA7026728072802804.97-
chr161223151122335212233522658.44-
chr27469226474692464746922642374.87+
chrX1390001181390003261390001182283.53+
chr12235370972235373022235372971737.71-
chr34381609243816297438162921737.71-
chr61619909661619911711619911661737.71-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA63596646655910409-
rDNA1746201119468879.32-
chr116526796665268258652682584717.73-
chr191827178182737818271782133.72+
chr161223152122335212233521982.11-
chr125329332253293522532933221550.84+
chr161835878183607818360781282.5-
chr27469226474692464746922641052.4+
chr11625396616253986162539861819.537-
chr16570956571156571156689.403-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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