DNA Damage Atlas

GSM4520699-Bliss_0_Gy_10_Nac_Replicate_2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11727664


Source Project ID:   

GSE150016

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

N-acetyl-l-cysteine


Treatment Time:   

1hr


Treatment Dose:   

10mM


Cell Phase:   

G1


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003058


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA6359670965595675.37-
rDNA1746207319464628.23-
chr116526796665268258652682584535.11-
chr13583666435836878358366643094.05+
chr125329332253293522532933222364.74+
rDNA7961816181612364.74-
chr175994074259941184599409832354.04+
chr175899990459000106589999052341.32+
chr21259231301259233321259231312341.32+
chr176109042361090627610904232318.37+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA63596670655929726.7-
rDNA17462073194618331.5-
chr93565786135658061356578618615.32+
chr116526796665268258652682587005.69-
chr191827178182737818271783427.08+
chr125329332253293522532933223158.85+
chr161223152122335212233522932.96-
chr161835878183607818360782191.78-
chr91401476551401478551401476551955.31+
chr116527332365273523652735231697.66-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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