DNA Damage Atlas

GSM4520701-Bliss_0_Gy_0_Nac_Replicate_3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11727666


Source Project ID:   

GSE150016

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

NT


Cell Phase:   

G1


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002878


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA6359667065598735.77-
chr116526796665268259652681737132.64-
rDNA1662204219573574.77-
chr139996632999966534999665293058.34-
chr125329332253293522532933222612.33+
chr91401476551401478551401476552612.33+
chr116256129762561501625612972561.11+
chr11833891491833893531833893492561.11-
chr125338026953380469533802692089.86+
chr161223152122335212233522089.86-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA63596591655920499.2-
rDNA17462042195720268.3-
chr116526796665268259652681737237.5-
chr93565786135658061356578614037.51+
chr161223152122335212233523080.49-
chr125329332253293522532933222408.81+
chr27469226474692464746922641339.78+
chr168895208388952283889520831069.92+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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