DNA Damage Atlas

GSM4520702-Bliss_10_Gy_0_Nac_Replciate_3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11727667


Source Project ID:   

GSE150016

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

gamma rays


Treatment Dose:   

10Gy


Cell Phase:   

G1


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002823


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr116526796665268259652681734619.08-
rDNA1746201119462946.43-
rDNA6359670965592677.04-
chr191827178182737818271781821.87+
chrX4721478247214988472149821768.81-
chr126717911567179327671791151718.75+
chr101236889901236891951236891901523.52-
chr61077850931077853011077850931501.54+
chr12312721812312723832312721821288.45+
chr195567806855678270556780701288.45+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA63596646655910409-
rDNA1746201119468879.32-
chr116526796665268258652681734717.73-
chr191827178182737818271782133.72+
chr161223152122335212233521982.11-
chr125329332253293522532933221550.84+
chr161835878183607818360781282.5-
chr27469226474692464746922641052.4+
chr11625396616253986162539861819.537-
chr16570956571156571156689.403-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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