DNA Damage Atlas

GSM4543402-BLISS_U2OS_Etoposide_Rep1_A1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11746318


Source Project ID:   

GSE150204

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Treated with/without 1ug/mL doxycycline for 24 hrs and with or without 25uM Etoposide for 3 hrs


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Others:   

treatment is unclear


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.267857


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201584661607451591856165.17+
rDNA3189585142495165.35+
chrUn_gl0002201525851552771536415092.32+
chrUn_gl0002201086131115821096694593.19+
rDNA91381302797803724.47+
chrUn_gl0002201144951185371152133690.15+
chr64428224442843844282341458.72+
chr1110832661108368611083364792.801+
chr1249161276249161492249161276536.793+
chr16878639768786446587864242389.105-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA91381115897806992.89+
chrUn_gl0002201584661607451591856240.91+
rDNA3189585142495340.35+
chrUn_gl0002201086131112881096695264.38+
chrUn_gl0002201525851552701536415247.32+
chrUn_gl0002201144951185371152133714.89+
chr64428224442843844282341951.38+
chr8835703818357058783570383910.47+
chr1110832661108368611083364887.837+
chr1249161276249161481249161276637.036+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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