DNA Damage Atlas

GSM4543403-BLISS_U2OS_Etoposide_Rep1_A2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11746319


Source Project ID:   

GSE150204

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Treated with/without 1ug/mL doxycycline for 24 hrs and with or without 25uM Etoposide for 3 hrs


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Others:   

treatment is unclear


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.424242


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201526221552461535734865.7+
rDNA3226585841814821.17+
chrUn_gl0002201086501116121096014264.9+
rDNA90921303396772369.83+
chrUn_gl0002201144061184791151102257.24+
chr64428226442843944282351432.01+
chr22273726172273728182273726171208.63+
chr22201138382011405520114055684.15-
chr14702348537023514170234859459.253+
chr1110830031108366211083417385.026+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA3593585141815103.11+
chrUn_gl0002201529851552461535734993.68+
chrUn_gl0002201087791112801096014558.5+
chrUn_gl0002201145721164281151103889.85+
rDNA90921094196773867.06+
chr64428228442843844282351657.06+
chr22273726172273728182273726171363.64+
chr22201138462011405520114055816.52-
chr1110832231108364211083417582.907+
chr14702348537023513270234859408.509+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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