DNA Damage Atlas

GSM4543404-BLISS_U2OS_Etoposide_Rep1_A3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11746320


Source Project ID:   

GSE150204

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Treated with/without 1ug/mL doxycycline for 24 hrs and with or without 25uM Etoposide for 3 hrs


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Others:   

treatment is unclear


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.285714


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201086571110421097551828.26+
rDNA3233584743351761.56+
chrUn_gl0002201525891552421537271733.5+
chrUn_gl0002201145361166071152711335.17+
chrUn_gl0002201585081607351592431211.95+
chr156679536166795786667955831034.77+
rDNA9109129529838752.434+
chr6442822944284374428234483.666+
chr13293737592937423829374037456.057+
chrUn_gl000216804758106180705358.068-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201529851549241537272366.34+
rDNA3502549543352312.44+
chrUn_gl0002201090081110421097552219.45+
chrUn_gl0002201146331163731152711529.89+
rDNA92001093898381503.44+
chr132937403729374238293740371397.04+
chrUn_gl0002201586051606941592431281.87+
chr156679536166795783667955831207.84+
chr6442823044284374428234587.053+
chrUn_gl000216804858088580705575.335-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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