DNA Damage Atlas

GSM4543409-BLISS_U2OS_Etoposide_Rep3_A2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11746325


Source Project ID:   

GSE150204

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Treated with/without 1ug/mL doxycycline for 24 hrs and with or without 25uM Etoposide for 3 hrs


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Others:   

treatment is unclear


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.238095


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA3593585741814685.99+
chrUn_gl0002201087791112931096014168.9+
chrUn_gl0002201529851555591535733971.91+
rDNA88261121496772573.52+
chrUn_gl0002201582321607361590822558.1+
chr64428228442843844282341806.81+
chrUn_gl0002201145721184781151101776.82+
chr22273726172273728182273726171768.8+
chr22201138462011405520114055900.579-
chr1110832231108364311083417604.64+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA3593585141815103.11+
chrUn_gl0002201529851552461535734993.68+
chrUn_gl0002201087791112801096014558.5+
chrUn_gl0002201145721164281151103889.85+
rDNA90921094196773867.06+
chr64428228442843844282341657.06+
chr22273726172273728182273726171363.64+
chr22201138462011405520114055816.52-
chr1110832231108364211083417582.907+
chr14702348537023513270234859408.509+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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