DNA Damage Atlas


GSM4564685-DMSO_gH2AX_ChIP-Seq




Basic Information

Manual

Sample ID:   

SRR11829924


Source Project ID:   

GSE151038

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

16hrs


Harvested Time:   

passages: P3


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM4564682-DMSO_Input; GSM4564683-DMSO_IgG_ChIP-Seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA54007999669914.9346/
chr179789000797893997978919914.9117/
chr1182506008251199825089913.2438/
chr1569436000694363996943619913.1365/
rDNA44200445994439912.7814/
rDNA4003799209912.6699/
chr617907800179081991790799912.0714/
chr812820600012824319912822459911.9882/
chr116556001656199165589911.8248/
chr1757913400579275995792049911.7327/
Download the Full Peak List



Motif Analysis

Manual





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