DNA Damage Atlas


GSM4564690-JQ1_gH2AX_ChIP-Seq




Basic Information

Manual

Sample ID:   

SRR11829929


Source Project ID:   

GSE151038

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

JQ1


Treatment Time:   

16hrs


Treatment Dose:   

500nM


Harvested Time:   

passages: P3


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM4564687-JQ1_Input; GSM4564688-JQ1_IgG_ChIP-Seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12400153991389971.3559/
rDNA44200445994439962.6518/
rDNA4003799209954.0114/
chr812820600012824219912822409949.4244/
rDNA54008999719946.3203/
chr1165251600652807996526619933.7134/
chr812874380012875799912875089925.9429/
chr1161726000617453996173569924.6563/
chr517219080017220119917219599923.8858/
chr1074028600740401997403439923.7689/
Download the Full Peak List



Motif Analysis

Manual





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