DNA Damage Atlas

GSM4565545-ESC_WT_EdU2h_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11831482


Source Project ID:   

GSE151056

Cell Type:   

mESC


Organism:   

Mus musculus


Strain:   

C57BL/6x129sV


Treatment:   

EdU


Treatment Time:   

2hrs


Treatment Dose:   

10uM


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

EdU-seq


Others:   

control: GSM4565551-ESC_WT_Input2h_rep1


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA382234136039328226.219/
rDNA27687280912792288.3169/
chr1631131813114020311362143.4969/
chr912392740512393449312392894336.3668/
rDNA35629360973586731.8646/
chrX16999419716999505516999461217.8091/
rDNA32930333923317316.6222/
chr912392432812392635512392555015.8214/
chr912393529012394183212393656410.7013/
chr71286995891287004401287000169.90333/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA382234105439328250.666/
rDNA27720280882792296.9566/
chr1631133303113955311362158.3903/
chr912392743312393447912392894336.5836/
rDNA35629360973586731.8646/
rDNA32940333893317317.1035/
chr712869964512870031612870001612.2665/
rDNA3176232657321799.62181/
chr41338136221338386801338276509.23491/
chr81117438571117594691117554548.81881/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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