DNA Damage Atlas

GSM4565546-ESC_ATRXKO_EdU2h_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11831483


Source Project ID:   

GSE151056

Cell Type:   

mESC


Organism:   

Mus musculus


Strain:   

C57BL/6x129sV


Treatment:   

EdU


Treatment Time:   

2hrs


Treatment Dose:   

10uM


Genotype:   

ATRX-/-


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

EdU-seq


Others:   

control: GSM4565551-ESC_WT_Input2h_rep1


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA38740410623924489.2654/
rDNA27734280842789226.2951/
chr912392745412393445212392882320.0472/
chr912393534812393739912393654518.7618/
chr1631132903113910311362616.7587/
chr912392420712392623712392513710.8873/
chrY2590202595852592089.23044/
rDNA3563036098359358.66407/
chrY9081311790814011908135567.37027/
chrY2610242614432613407.1943/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1631134013113910311362620.3871/
chrY2590202595852592089.23044/
chrY2610242614432613407.1943/
chr41478121761478131441478125183.84435/
chr142131168621313210213127722.51183/
chr41478051151478059471478054672.42074/
chr142163656121637356216370942.23141/
chr41454486331454497721454489562.16642/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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