DNA Damage Atlas

GSM4565547-ESC_DAXXKO_EdU2h_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11831484


Source Project ID:   

GSE151056

Cell Type:   

mESC


Organism:   

Mus musculus


Strain:   

C57BL/6x129sV


Treatment:   

EdU


Treatment Time:   

2hrs


Treatment Dose:   

10uM


Genotype:   

DAXX-/-


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

EdU-seq


Others:   

control: GSM4565551-ESC_WT_Input2h_rep1


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr912392739212393451312392927117.4266/
chr1631133023113983311362415.3817/
chr912393530812393805712393692913.7711/
chrY9081151290814032908136033.8942/
chr87231173472315783723135403.51596/
chr87229833872304127723029693.41575/
chr87064249170664247706520003.30556/
chr87230525072311605723071303.2966/
chr11366883201366975451366934953.28165/
chr18483905284859236848524233.26012/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1631133923113901311362420.5795/
chr912392742812393450412392927117.5374/
chrY9081323090814028908136035.87239/
chr178020011280200931802002982.81977/
chr81230396921230412251230402302.5254/
chr41460557471460573031460566611.63772/
chr14953956495546649549051.53345/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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