DNA Damage Atlas


GSM4565548-ESC_WT_EdU2h_rep2




Basic Information

Manual

Sample ID:   

SRR11831485


Source Project ID:   

GSE151056

Cell Type:   

mESC


Organism:   

Mus musculus


Strain:   

C57BL/6x129sV


Treatment:   

EdU


Treatment Time:   

2hrs


Treatment Dose:   

10uM


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

EdU-seq


Others:   

control: GSM4565551-ESC_WT_Input2h_rep1


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA382204105439294169.873/
rDNA27720280882793149.9765/
chr1631133303113955311362244.8909/
rDNA35622361153586619.23/
chr912392743312393447912392945511.7458/
rDNA3294033389332458.30627/
chr71286996451287003161287000038.16751/
rDNA3162632657320896.98623/
chr41338136221338386841338200136.37504/
chr38244530824492482447155.81676/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA382234105439294170.053/
rDNA27720280882793149.9765/
chr1631133303113955311362244.8909/
rDNA35629360973586620.2572/
chr912392743312393447912392945511.7458/
rDNA3294033389332458.30627/
chr71286996451287003161287000038.16751/
rDNA3176232657320898.03192/
chr41338136221338386801338200136.37606/
chr38244530824492482447155.81676/
Download the Full Merged Peak List



Motif Analysis

Manual





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