DNA Damage Atlas

GSM4565548-ESC_WT_EdU2h_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11831485


Source Project ID:   

GSE151056

Cell Type:   

mESC


Organism:   

Mus musculus


Strain:   

C57BL/6x129sV


Treatment:   

EdU


Treatment Time:   

2hrs


Treatment Dose:   

10uM


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

EdU-seq


Others:   

control: GSM4565551-ESC_WT_Input2h_rep1


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA382204105439294169.873/
rDNA27720280882793149.9765/
chr1631133303113955311362244.8909/
rDNA35622361153586619.23/
chr912392743312393447912392945511.7458/
rDNA3294033389332458.30627/
chr71286996451287003161287000038.16751/
rDNA3162632657320896.98623/
chr41338136221338386841338200136.37504/
chr38244530824492482447155.81676/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA382234105439294170.053/
rDNA27720280882793149.9765/
chr1631133303113955311362244.8909/
rDNA35629360973586620.2572/
chr912392743312393447912392945511.7458/
rDNA3294033389332458.30627/
chr71286996451287003161287000038.16751/
rDNA3176232657320898.03192/
chr41338136221338386801338200136.37606/
chr38244530824492482447155.81676/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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