DNA Damage Atlas

GSM4568567-B_HeLa_S1_L001_R1_HWGLVBCXY_V1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11851373


Source Project ID:   

GSE108172

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

i-BLESS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000984


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0436414985.9729-
chr1334403277344034773440327784.3196+
chr315289489315289510115289507070.7296-
chrX85479914854802538548005354.4079+
chr311894343711894377511894357453.8306+
chr284247744842479448424774452.9727+
chr1534200216342004313420041651.8883-
chr1775281475301575281450.7953+
chr1169592800695930226959282249.9243+
chr615194909615194930215194910249.411+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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